Hotel vacation rentals in San Juan County

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Top-rated hotel rentals in San Juan County

Guests agree: these hotel rentals are highly rated for location, cleanliness, and more.

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Guest favorite

Hotel room in Friday Harbor

5 out of 5 average rating, 75 reviews

Private guesthouse w/ hot tub & breathtaking views

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Cedar hot tub in the deck overlooking the Salish Sea, outdoor shower, and pet friendly for friendly pets! KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bthrm.

Guest favorite

Hotel room in Friday Harbor

4.99 out of 5 average rating, 95 reviews

Private guesthouse immersed in nature

Your private guesthouse awaits at ~ Inn at Saltwater Farm ~ a modern, Scandinavian-style, boutique inn situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your separate and private guesthouse with breathtaking views, modern amenities, and miles of trails, gardens, and natural beauty to explore. Private deck & floor-to-ceiling windows with a cozy & intimate woodsy view. Wheelchair accessible. KING bedroom + QUEEN loft + DOUBLE sleeper sofa + bathroom.

Guest favorite

Casa particular in Friday Harbor

5 out of 5 average rating, 31 reviews

Blue Horse Ranch / Private apartment with deck

You will be close to everything when you stay at this centrally-located farmhouse. Plenty of space and wide views, from the Olympic Mountains and False bay, to the San Juan Valley. Lots of farm animals and wildlife. 7 minutes from Town. We offer a private 735 Sq Ft Farmhouse apartment. It has two queen beds in the bedroom and queen sofa sleeper in the living room. We share the front porch, back deck is private. Kid and infant friendly. Lic#2000PROV104

Hotel room in Friday Harbor

4.59 out of 5 average rating, 86 reviews

Wayfarers Guest House. Room #4, the Forecastle

Thank you for finding the Wayfarers Rest, providing comfortable and convenient lodging for active travelers since 1999. Room 4 is a private room that can sleep only 2, all linens provided. The common areas you will share with other guests (fully equipped kitchen, dining, living room and bathrooms) Wayfarers Rest is located just 4 blocks from the ferry terminal and two blocks from main St., easy walking. Free Wi-Fi, parking & chicken eggs.

Guest favorite

Hotel room in Lopez Island

4.88 out of 5 average rating, 50 reviews

~VintageLuxury~ SoakingTub Fireplace King Bed WiFi

✔ No Cleaning Fees ✔ Super Fast WIFI ✔ Fireplace ✔ Full Bathroom w. Soaking Tub ✔ In Room Coffee + Decaf & Tea ✔ Leather couch + King Sleigh Bed ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ 24/7 Staff that are here when you need them and never when you don't :) ✔ TV Free Property- Bring your Tablet for Movies ✔ Free Parking Our commitment to you has made us TripAdvisors #1 Hotel in the San Juan Islands.

Superhost

Hotel room in Friday Harbor

5 out of 5 average rating, 3 reviews

Unique private suite w/ forest & meadow views

Your unique 700+ sqft suite awaits at ~ at Saltwater Farm ~ a modern, Scandinavian farm-style abode, situated on 162 wild and beautiful acres just outside the town of Friday Harbor. Escape to your large private suite above our stunning new barn with kitchen, modern amenities, DSL WiFi internet, and miles of trails, gardens, and natural beauty to explore. KING bedroom + 2 DOUBLE sleeper sofa loft + TWIN bedroom + bathroom

Guest favorite

Hotel room in Friday Harbor

4.98 out of 5 average rating, 41 reviews

Cedar & Mandala two bedroom suite at Juniper Lane

Juniper Lane Guest House, a hip and unique boutique Inn on San Juan Island. This unique Friday Harbor accommodations is a custom crafted bold mosaic of exotic woods, tile, art, and color. Nestled on the edge of Friday Harbor overlooking Beaverton Valley it has a rural feel yet is still close to town. This Boutique Inn offers a variety of accommodations that are “brilliant and affordable” for everyone.

Guest favorite

Hotel room in Lopez Island

4.92 out of 5 average rating, 39 reviews

Romantic Island Hotel with Breathtaking Sunsets

✔ Super Fast WIFI ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom ✔ Private Covered Porch ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ 24/7 that are here when you need them and never when you don't :) ✔ Walk to shops, restaurants, and beaches. The Edenwild is a 10 room Boutique Hotel that is Elegant as well as friendly. Your privacy and comfort is our top priority.

Guest favorite

Hotel room in Lopez Island

4.92 out of 5 average rating, 103 reviews

•Sweet Island Hotel• Fireplace, Soaking Tub, WIFI

✔ Super Fast WIFI ✔ Fireplace ✔ In Room Coffee + Decaf & Tea ✔ Full Bathroom w. Soaking Tub ✔ 24/7 Staff That There When You Need Them and Never When You Don't :) ✔ Access to All Common Spaces at Edenwild Boutique Hotel ✔ Onsite Bicycle and Kayak rentals We think of every aspect of your stay, and our staff is always there when you need us and never when you don’t.

Hotel room in Eastsound

4.6 out of 5 average rating, 5 reviews

Bayside King_Ocean Front_Island Views

WOAH.. THE BAYSIDE KING ROOMS HAVE PARTIAL WATER VIEWS AND OVERLOOK THE HISTORIC MORAN MANSION OR THE ROSARIO MARINA. ✔ 5 Min To Moran State Park ✔ Ocean Views For Days ✔ Dog Friendly ✔ Roku With Streaming Apps ✔ Smart Lock With Contactless Check-in ✔ Weddings Welcomed ✔ Balcony and patio with seating Book Today! Make Memories With Friends And Family! :)